Trinotate is an annotation method suitable for computationally assembled transcripts from RNAseq sequencing data.




Usage on Bridges


To see what versions of Trinotate are available type

module avail trinotate

To see what other modules are needed, what commands are available and how to get additional help type

module help  trinotate

To use Trinotate, include a command like this in your batch script to load the Trinotate module:

module load trinotate

Be sure you also load any other modules needed, as listed by the module help trinotate command.


User Information

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Technical questions:

Send mail to or call the PSC hotline: 412-268-6350.