FastQC
FastQC is a quality control tool for high throughput sequence data.
Documentation
Usage on Bridges-2
To see what versions of FASTQC are available and if there is more than one, which is the default, along with some help, type
module spider fastqc
To use FAASTQC, include a command like this in your batch script or interactive session to load the FASTQC module: (note ‘module load’ is case-sensitive):
module load FastQC
Usage on Bridges
To see what FastQC commands are available and how to get additional help, type
module help fastqc
To see what versions of FastQC are available, type
module avail fastqc
To use FastQC, include a line like this in your job script or interactive session to load the FastQC module
module load fastqc
Be sure you also load any other modules needed, as listed by the module help fastqc command.