HOMER
HOMER is a suite of tools for motif discovery and next-gen sequence analysis.
Documentation
Usage on Bridges-2
The HOMER dataset is available on Bridges-2 at /ocean/datasets/community/genomics/homer.
To see what versions of HOMER are available and if there is more than one, which is the default, along with some help, type
module spider homer
To use HOMER, include a command like this in your batch script or interactive session to load the HOMER module: (note ‘module load’ is case-sensitive):
module load homer
Be sure you also load any other modules needed, as listed by the module help homer command.