Transrate is software for de novo transcriptome assembly quality analysis.
- Transrate web home
- Citation: If you use Transrate, please site this publication:
Richard D Smith-Unna, Chris Boursnell, Rob Patro, Julian M Hibberd, Steven Kelly. (2016) TransRate: reference free quality assessment of de-novo transcriptome assemblies. Genome Research doi: http://dx.doi.org/10.1101/gr.196469.115
To see what versions of Transrate are available type
module avail transrate
To see what other modules are needed, what commands are available and how to get additional help type
module help transrate
To use Transrate, include a command like this in your batch script or interactive session to load the transrate module:
module load transrate
Be sure you also load any other modules needed, as listed by the
module help transrate command.