TMHMM

 

TMHMM is for prediction of transmembrane helices in proteins.

Documentation

  • TMHMM User Guide
  • Erik L.L. Sonnhammer, Gunnar von Heijne, and Anders Krogh: 
    A hidden Markov model for predicting transmembrane helices in protein sequences.
    In Proc. of Sixth Int. Conf. on Intelligent Systems for Molecular Biology, p 175-182 
    Ed J. Glasgow, T. Littlejohn, F. Major, R. Lathrop, D. Sankoff, and C. Sensen 
    Menlo Park, CA: AAAI Press, 1998

 

Usage

  • Bridges

To see what versions of TMHMM are available type

module avail tmhmm

To see what other modules are needed, what commands are available and how to get additional help type

module help  tmhmm

To use TMHMM, include a command like this in your batch script to load the TMHMM module:

module load tmhmm

Be sure you also load any other modules needed, as listed by the module help tmhmm command.

User Information

Passwords
Connect to PSC systems:
Policies
Technical questions:

Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.