RNAmmer predicts 5s/8s, 16s/18s, and 23s/28s ribosomal RNA in full genome sequences.
- Manual page for RNAmmer
- RNAmmer: consistent and rapid annotation of ribosomal RNA genes Karin Lagesen, Peter Hallin, Einar Andreas Rødland, Hans-Henrik Stærfeldt, Torbjørn Rognes, David W. Ussery Nucleic Acids Res. 2007 May; 35(9): 3100–3108. Published online 2007 April 22. doi: 10.1093/nar/gkm160 PMCID: PMC1888812
To see what versions of RNAmmer are available type
module avail rnammer
To see what other modules are needed, what commands are available and how to get additional help type
module help rnammer
To use RNAmmer, include a command like this in your batch script to load the RNAmmer module:
module load rnammer
Be sure you also load any other modules needed, as listed by the
module help rnammer command.