CMVkit is a command line toolkit and Python library for detecting copy number variants and alterations genome-wide from high-throughput sequencing.
To see what versions of CNVkit are available type
module avail cnvkit
To see what other modules are needed, what commands are available and how to get additional help type
module help cnvkit
To use CNVkit, include a command like this in your batch script or interactive session to load the CNVkit module:
module load cnvkit
Be sure you also load any other modules needed, as listed by the
module help cnvkit command.