Bowtie

Bowtie is an ultrafast, memory-efficient short read aligner.

Documentation

 

Usage on Bridges

 

To get help on Bowtie, type:

module help bowtie

 

To run Bowtie, include a command like this in your job script or interactive session to load the bowtie module:

module load bowtie

 

Usage on BioU

The bowtie programs are availiable through the Galaxy instance on biou.

To make the bowtie programs availiable through the command line, csh users should enter the following command:

source /packages/bin/SETUP_BIO_SOFTWARE

To make the bowtie programs availiable through the command line, bash users should enter the following command:

source /packages/bin/SETUP_BIO_SOFTWARE

 

 

See more help for Bowtie.