More on Bedops

Programs in the bedops package

bedextract Efficiently extracts features from BED input
bedmap Maps source signals from map-file onto qualified target regions from ref-file. Calculates an output for every ref-file element
bedops Offers set and multiset operations for files in BED format
closest-features For every element in input-file, find those elements in query-file nearest to its left and right edges
sort-bed Sorts input BED file(s) into the order required by other utilities. Loads all input data into memory
starch Lossless compression of any BED file
starchcat Merge multiple starch archive inputs into one starch archive output
unstarch Decompression of a starch archive