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Bedops

 

Bedops is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

Documentation

Usage on Bridges-2

To see what versions of  Bedops are available and if there is more than one, which is the default, along with some help, type

module spider bedops

To use Bedops, include a command like this in your batch script or interactive session to load the BEDOPS module: (note ‘module load’ is case-sensitive):

 module load BEDOPS