| bedextract |
Efficiently extracts features from BED input |
| bedmap |
Maps source signals from map-file onto qualified target regions from ref-file. Calculates an output for every ref-file element |
| bedops |
Offers set and multiset operations for files in BED format |
| closest-features |
For every element in input-file, find those elements in query-file nearest to its left and right edges |
| sort-bed |
Sorts input BED file(s) into the order required by other utilities. Loads all input data into memory |
| starch |
Lossless compression of any BED file |
| starchcat |
Merge multiple starch archive inputs into one starch archive output |
| unstarch |
Decompression of a starch archive |
