Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-Seq data.
Documentation
Usage on Bridges-2
To see what versions of Trinity are available and if there is more than one, which is the default, along with some help, type
module spider trinity
To use Trinity, include a command like this in your batch script or interactive session to load the Trinity module: (note ‘module load’ is case-sensitive):
module load Trinity
Usage on Bridges
To see what versions of Trinity are available type
module avail trinity
To see what other modules are needed, what commands are available and how to get additional help type
module help trinity
To use Trinity, include a command like this in your batch script or interactive session to load the Trinity module:
module load trinity
Be sure you also load any other modules needed, as listed by the module help trinity command.