STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads and maps junction reads and spanning reads to a reference annotation set.
Usage on Bridges-2
To see what versions of STAR-Fusion are available and if there is more than one, which is the default, along with some help, type
module spider star-fusion
To use STAR-Fusion include a command like this in your batch script or interactive session to load the STAR-Fusion module: (note ‘module load’ is case-sensitive):
module load STAR-Fusion
Usage on Bridges
To see what versions of STAR-fusion are available type
module avail star-fusion
To see what other modules are needed, what commands are available and how to get additional help type
module help star-fusion
To use STAR-Fusion, include a command like this in your batch script or interactive session to load the star-fusion module:
module load star-fusion
Be sure you also load any other modules needed, as listed by the
module help star-fusion command.