STAR-Fusion

STAR-Fusion uses the STAR aligner to identify candidate fusion transcripts supported by Illumina reads and maps junction reads and spanning reads to a reference annotation set.

Documentation

Usage on Bridges-2

To see what versions of STAR-Fusion are available and if there is more than one, which is the default, along with some help, type

module spider star-fusion

To use STAR-Fusion include a command like this in your batch script or interactive session to load the STAR-Fusion module: (note ‘module load’ is case-sensitive):

module load STAR-Fusion

Usage on Bridges

To see what versions of STAR-fusion are available type

module avail star-fusion

To see what other modules are needed, what commands are available and how to get additional help type

module help  star-fusion

To use STAR-Fusion, include a command like this in your batch script or interactive session to load the star-fusion module:

module load star-fusion

Be sure you also load any other modules needed, as listed by the module help star-fusion command.