SRA Toolkit
The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
Documentation
Usage on Bridges-2
To see what versions of SRA Toolkit are available and if there is more than one, which is the default, along with some help, type
module spider sra-toolkit
To use SRA Tookit, include a command like this in your batch script or interactive session to load the SRA Toolkit module: (note ‘module load’ is case-sensitive):
module load sra-toolkit
Usage on Bridges
To see what versions of SRA Toolkit are available type
module avail sra-toolkit
To see what other modules are needed, what commands are available and how to get additional help type
module help sra-toolkit
To use SRA Toolkit, include a command like this in your batch script or interactive session to load the SRA Toolkit module:
module load sra-toolkit
Be sure you also load any other modules needed, as listed by the module help sra-toolkit command.