SRA Toolkit

SRA Toolkit


The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.




Usage on Bridges


To see what versions of SRA Toolkit are available type

module avail sra-toolkit

To see what other modules are needed, what commands are available and how to get additional help type

module help  sra-toolkit

To use SRA Toolkit, include a command like this in your batch script or interactive session to load the SRA Toolkit module:

module load sra-toolkit

Be sure you also load any other modules needed, as listed by the module help sra-toolkit command.