RAxML (Randomized Axelerated Maximum Likelihood) is a program for maximum likelihood phylogeny estimation for interpreting relationships between sets of data.
- RAxML home
- Citation: A. Stamatakis: “RAxML Version 8: A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies”. In Bioinformatics, 2014, open access.
Usage on Bridges-2
To see what versions of RAxML are available and if there is more than one, which is the default, along with some help, type
module spider raxml
To use RAxML, include a command like this in your batch script or interactive session to load the RAxML module: (note ‘module load’ is case-sensitive):
module load RAxML
Usage on Bridges
To see what versions of RAxML are available type
module avail raxml
To see what other modules are needed, what commands are available and how to get additional help type
module help raxml
To use RAxML, include a command like this in your batch script or interactive session to load the RAxML module:
module load raxml
Be sure you also load any other modules needed, as listed by the
module help raxml command.