Short description


  • Prokka home
  • Please cite Prokka: Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014 Jul 15;30(14):2068-9. PMID:24642063



The Prokka dataset is available on Bridges at /pylon5/datasets/community/genomics/prokka.


To see what versions of Prokka are available type

module avail prokka

To see what other modules are needed, what commands are available and how to get additional help type

module help prokka

To use Prokka, include a command like this in your batch script or interactive session to load the prokka module:

module load prokka


Be sure you also load any other modules needed, as listed by the module help prokka command.