Methylpy is a python-based analysis pipeline for

  • (single-cell) (whole-genome) bisulfite sequencing data
  • (single-cell) NOMe-seq data
  • differential methylation analysis





To see what versions of methylpy are available type

module avail methylpy

To see what other modules are needed, what commands are available and how to get additional help type

module help methylpy

To use methylpy, include a command like this in your batch script or type it in your interactive session to load the methylpy module:

module load methylpy


Be sure you also load any other modules needed, as listed by the module help methylpy command.