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Methylpy is a python-based analysis pipeline for

  • (single-cell) (whole-genome) bisulfite sequencing data
  • (single-cell) NOMe-seq data
  • differential methylation analysis



Usage on Bridges-2

To see what versions of methylpy are available  and if there is more than one, which is the default, along with some help, type

module spider methylpy

To use Bedops, include a command like this in your batch script or interactive session to load the methylpy module: (note ‘module load’ is case-sensitive):

module load methylpy