Methylpy
Methylpy is a python-based analysis pipeline for
- (single-cell) (whole-genome) bisulfite sequencing data
- (single-cell) NOMe-seq data
- differential methylation analysis
Documentation
Usage on Bridges-2
To see what versions of methylpy are available and if there is more than one, which is the default, along with some help, type
module spider methylpy
To use Bedops, include a command like this in your batch script or interactive session to load the methylpy module: (note ‘module load’ is case-sensitive):
module load methylpy