MEGAN is a MEta Genome ANalyzer written by Daniel H. Huson of the University of Tübingen.  MALT (the MEGAN alignment tool) is also installed on Bridges.



Usage on Bridges


To see what versions of MEGAN are available type

module avail megan

To see what other modules are needed, what commands are available and how to get additional help type

module help  megan

To use MEGAN, include a command like this in your batch script or interactive session to load the MEGAN module:

module load megan

Be sure you also load any other modules needed, as listed by the module help megan command.