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Kraken2 is the newest version of Kraken.  It is a taxonomic sequence classifier that assigns taxonomic labels to DNA sequences.


Usage on Bridges-2

To see what versions of Kraken2 are available and if there is more than one, which is the default, along with some help, type

module spider kraken2

To use Kraken2, include a command like this in your batch script or interactive session to load the Kraken2 module: (note ‘module load’ is case-sensitive):

module load kraken2