HTSlib is a C library for reading and writing high-throughput sequencing data. It is the core library used by SAMtools and BCFTools.
- HTSlib GitHub page
- Citation: Please cite this paper when using HTSlib for your publications.
HTSlib: C library for reading/writing high-throughput sequencing data
James K Bonfield, John Marshall, Petr Danecek, Heng Li, Valeriu Ohan, Andrew Whitwham, Thomas Keane, Robert M Davies
GigaScience, Volume 10, Issue 2, February 2021, giab007, https://doi.org/10.1093/gigascience/giab007
Usage on Bridges-2
To see what versions of HTSlib are available and if there is more than one, which is the default, along with some help, type
module spider htslib
To use HTSlib, include a command like this in your batch script or interactive session to load the HTSlib module: (note ‘module load’ is case-sensitive):
module load htslib