HOMER

HOMER is a suite of tools for motif discovery and next-gen sequence analysis.

Documentation

• HOMER home page

Usage on Bridges-2

To see what versions of HOMER are available and if there is more than one, which is the default, along with some help, type

module spider homer

To use HOMER, include a command like this in your batch script or interactive session to load the HOMER module: (note ‘module load’ is case-sensitive):

module load hmmer

Usage on Bridges

The HOMER dataset is available on Bridges at /pylon5/datasets/community/genomics/homer.

To see what versions of HOMER are available type

module avail homer

To see what other modules are needed, what commands are available and how to get additional help type

module help  homer

To use Homer, include a command like this in your batch script or interactive session to load the homer module:

module load homer

Be sure you also load any other modules needed, as listed by the module help homer command.