HOMER
HOMER is a suite of tools for motif discovery and next-gen sequence analysis.
Documentation
Usage on Bridges-2
To see what versions of HOMER are available and if there is more than one, which is the default, along with some help, type
module spider homer
To use HOMER, include a command like this in your batch script or interactive session to load the HOMER module: (note ‘module load’ is case-sensitive):
module load hmmer
Usage on Bridges
The HOMER dataset is available on Bridges at /pylon5/datasets/community/genomics/homer.
To see what versions of HOMER are available type
module avail homer
To see what other modules are needed, what commands are available and how to get additional help type
module help homer
To use Homer, include a command like this in your batch script or interactive session to load the homer module:
module load homer
Be sure you also load any other modules needed, as listed by the module help homer command.