Guppy

Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.

Documentation

• To access the documentation forum, register for a free account here:  https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revac_14dec2018/linux-guppy

Usage on Bridges-2

To see what versions of Guppy are available and if there is more than one, which is the default, along with some help, type

module spider guppy

Note that there is a guppy module for use on the RM or EM nodes and another for use on the GPU nodes.

To use Guppy, include a command like this in your batch script or interactive session to load the Guppy module: (note ‘module load’ is case-sensitive):

module load guppy

or

module load guppy-gpu