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Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.


Usage on Bridges-2

To see what versions of Guppy are available and if there is more than one, which is the default, along with some help, type

module spider guppy

Note that there is a guppy module for use on the RM or EM nodes and another for use on the GPU nodes.

To use Guppy, include a command like this in your batch script or interactive session to load the Guppy module: (note ‘module load’ is case-sensitive):

module load guppy


module load guppy-gpu