Guppy is a data processing toolkit that contains the Oxford Nanopore Technologies’ basecalling algorithms.
- To access the documentation forum, register for a free account here: https://community.nanoporetech.com/protocols/Guppy-protocol/v/gpb_2003_v1_revac_14dec2018/linux-guppy
Usage on Bridges-2
To see what versions of Guppy are available and if there is more than one, which is the default, along with some help, type
module spider guppy
Note that there is a guppy module for use on the RM or EM nodes and another for use on the GPU nodes.
To use Guppy, include a command like this in your batch script or interactive session to load the Guppy module: (note ‘module load’ is case-sensitive):
module load guppy
module load guppy-gpu