FastQC

FastQC is a quality control tool for high throughput sequence data.

Documentation

Usage on Bridges-2

To see what versions of FASTQC are available and if there is more than one, which is the default, along with some help, type

module spider fastqc

To use FAASTQC, include a command like this in your batch script or interactive session to load the FASTQC module: (note ‘module load’ is case-sensitive):

module load FastQC

Usage on Bridges

To see what FastQC commands are available and how to get additional help, type

module help fastqc

To see what versions of FastQC are available, type

module avail fastqc

To use FastQC, include a line like this in your job script or interactive session to load the FastQC module

module load fastqc

Be sure you also load any other modules needed, as listed by the  module help fastqc command.