Cutadapt
Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.
Documentation
Usage on Bridges-2
To see what versions of Cutadapt are available and if there is more than one, which is the default, along with some help, type
module spider cutadapt
To use Cutadapt, include a command like this in your batch script or interactive session to load the Cutadapt module: (note ‘module load’ is case-sensitive):
module load cutadapt
Usage on Bridges
To see what versions of cutadaptt are available type
module avail cutadapt
To see what other modules are needed, what commands are available and how to get additional help type
module help cutadapt
To use cutadapt, include a command like this in your batch script or interactive session to load the cutadapt module:
module load cutadapt
Be sure you also load any other modules needed, as listed by the module help cutadapt
command.