Cutadapt

Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.

Documentation

• Cutadapt home

Usage on Bridges-2

To see what versions of Cutadapt are available and if there is more than one, which is the default, along with some help, type

module spider cutadapt

To use Cutadapt, include a command like this in your batch script or interactive session to load the Cutadapt module: (note ‘module load’ is case-sensitive):

module load cutadapt

Usage on Bridges

To see what versions of cutadaptt are available type

module avail cutadapt

To see what other modules are needed, what commands are available and how to get additional help type

module help cutadapt

To use cutadapt, include a command like this in your batch script or interactive session to load the cutadapt module:

module load cutadapt

Be sure you also load any other modules needed, as listed by the module help cutadapt command.