Bowtie
Bowtie is an ultrafast, memory-efficient short read aligner.
Documentation
- Website: http://bowtie-bio.sourceforge.net/index.shtml
- Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10:R25.
Usage on Bridges
To get help on Bowtie, type:
module help bowtie
To run Bowtie, include a command like this in your job script or interactive session to load the bowtie module:
module load bowtie
Usage on BioU
The bowtie programs are availiable through the Galaxy instance on biou.
To make the bowtie programs availiable through the command line, csh users should enter the following command:
source /packages/bin/SETUP_BIO_SOFTWARE
To make the bowtie programs availiable through the command line, bash users should enter the following command:
source /packages/bin/SETUP_BIO_SOFTWARE
