BCFTOOLS

BCFtools is a library of utilities for variant calling and manipulating VCFs (Variant Call Format) and BCFs (Binary Call Format).

Documentation

• BCFtools web site
• BCFtools Github site

See also: HTSlib

Usage on Bridges-2

To see what versions of BCFTools are available and if there is more than one, which is the default, along with some help, type

module spider bcftools

To use BCFTools, include a command like this in your batch script or interactive session to load the BCFTools module: (note ‘module load’ is case-sensitive):

module load bcftools