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BCFTOOLS

BCFtools is a library of utilities for variant calling and manipulating VCFs (Variant Call Format) and BCFs (Binary Call Format).

Documentation

Usage on Bridges-2

To see what versions of BCFTools are available and if there is more than one, which is the default, along with some help, type

module spider bcftools

To use BCFTools, include a command like this in your batch script or interactive session to load the BCFTools module: (note ‘module load’ is case-sensitive):

module load bcftools