BAMTOOLS

BAMTools is a C++ API and command line toolkit for workling with BAM data.

Documentation

Usage

On Bridges-2

To see what versions of BAMTools are available, the default version if there is more than one, and some help,  type

module spider bamtools

To use BAMTools, include a command like this in your batch script or interactive session to load the BAMTools module:

module load bamtools

On Bridges

To see what versions of BAMTools are available type

module avail bamtools

To see what other modules are needed, what commands are available and how to get additional help type

module help  bamtools

To use BAMTools, include a command like this in your batch script or interactive session to load the BAMTools module:

module load bamtools

Be sure you also load any other modules needed, as listed by the module help bamtools command.