BAMTOOLS
BAMTools is a C++ API and command line toolkit for workling with BAM data.
Documentation
- Web site
- BAMTools wiki, includes a link to a tutorial
Usage
On Bridges-2
To see what versions of BAMTools are available, the default version if there is more than one, and some help, type
module spider bamtools
To use BAMTools, include a command like this in your batch script or interactive session to load the BAMTools module:
module load bamtools
On Bridges
To see what versions of BAMTools are available type
module avail bamtools
To see what other modules are needed, what commands are available and how to get additional help type
module help bamtools
To use BAMTools, include a command like this in your batch script or interactive session to load the BAMTools module:
module load bamtools
Be sure you also load any other modules needed, as listed by the module help bamtools command.
