Augustus predicts genes in eukaryotic genomic sequences. It is provided by Mario Stanke of the Bioinformatics Group of the Institute for Mathematics and Computer Science at the University of Greifswald.
- Augustus web site
- GitHub source
- If you use Augustus in your research, please cite:
Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008). Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics, 24(5), pages 637–644, doi: 10.1093/bioinformatics/btn013
AUGUSTUS datasets are installed on Bridges-2 at /ocean/datasets/community/genomics/AUGUSTUS.
To see what versions of AUGUSTUS are available, and which is the default if there is more than one, type:
module spider augustus
To see what other modules are needed, what commands are available and how to get additional help type (note that the
module help command is case-sensitive):
module help AUGUSTUS
To use Augustus, include a command like this in your batch script or interactive session to load the augustus module (note that the
module load command is case-sensitive):
module load AUGUSTUS