UNCeqR is a method and associated software for discovering somatic mutations using the integration of DNA and RNA sequencing.
- UNCeqR web site
- GitHub page for UNCeqR
- Wilkerson MD, Cabanski CR, Sun W, Hoadley KA, Walter V, Mose LE, Troester MA, Hammerman PS, Parker JS, Perou CM, Hayes DN. (2014) Integrated RNA and DNA sequencing improves mutation detection in low purity tumors. Nucleic Acids Research. Published online June 26, 2014 doi:10.1093/nar/gku489
Usage on Bridges
To see what versions of UNCeqR are available type
module avail unceqr
To see what other modules are needed, what commands are available and how to get additional help type
module help unceqr
To use UNCeqR, include a command like this in your batch script to load the UNCeqR module:
module load unceqr
Be sure you also load any other modules needed, as listed by the
module help unceqr command.