SRA Toolkit

 

The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.

 

Documentation

 

Usage

  • Bridges

To see what versions of SRA Toolkit are available type

module avail sra-toolkit

To see what other modules are needed, what commands are available and how to get additional help type

module help  sra-toolkit

To use SRA Toolkit, include a command like this in your batch script to load the SRA Toolkit module:

module load sra-toolkit

Be sure you also load any other modules needed, as listed by the module help sra-toolkit command.

User Information

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Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.