SPAdes

The St. Petersburg Academic Univesrity genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies.

 

Documentation

 

Usage

  • Bridges

To see what versions of SPAdes are available type

module avail spades

To see what other modules are needed, what commands are available and how to get additional help type

module help  spades

To use SPAdes, include a command like this in your batch script to load the SPAdes module:

module load spades

Be sure you also load any other modules needed, as listed by the module help spades command.

User Information

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Technical questions:

Send mail to remarks@psc.edu or call the PSC hotline: 412-268-6350.