Shannon

 

Shannon is a program for assembling transcripts from RNA-Seq data. It is based on an information-theoretic approach to assembly that seeks to establish both necessary and sufficient conditions for optimal assembly as well as algorithms for achieving optimal assembly.

Documentation

 

Usage

 

To see what versions of Shannon are available type

module avail shannon

To see what other modules are needed, what commands are available and how to get additional help type

module help  shannon

To use Shannon, include a command like this in your batch script or interactive session to load the shannon module:

module load shannon

 

Be sure you also load any other modules needed, as listed by the module help shannon command.

 

 

 

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