MACSE (Multiple Alignment of Coding SEquences) aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multiple frameshifts and/or stop codons.
- MACSE home
- MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons. Vincent Ranwez, Sébastien Harispe, Frédéric Delsuc, Emmanuel JP Douzery PLoS One 2011, 6(9): e22594.
To see what versions of MACSE are available type
module avail macse
To see what other modules are needed, what commands are available and how to get additional help type
module help macse
To use MACSE, include a command like this in your batch script or interactive session to load the MACSE module:
module load macse
Be sure you also load any other modules needed, as listed by the
module help macse command.