FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes.
- FragGeneScan site on sourceforge
- Citation: Mina Rho, Haixu Tang, and Yuzhen Ye. FragGeneScan: Predicting Genes in Short and Error-prone Reads. Nucl. Acids Res., 2010 doi: 10.1093/nar/gkq747
To see what versions of FragGeneScan are available type
module avail fraggenescan
To see what other modules are needed, what commands are available and how to get additional help type
module help fraggenescan
To use FragGeneScan, include a command like this in your batch script to load the FragGeneScan module:
module load fraggenescan
Be sure you also load any other modules needed, as listed by the
module help fraggenescan command.