Weaver is a tool which, given a whole genome sequencing sample from a tumor sample (in BAM format) and reference FASTA file as input, returns allele-specific copy numbers of regions and phased breakpoints of structural variants.





To see what versions of Weaver are available type

module avail weaver

To see what other modules are needed, what commands are available and how to get additional help type

module help  weaver

To use Weaver, include a command like this in your batch script or interactive session to load the weaver module:

module load weaver


Be sure you also load any other modules needed, as listed by the module help weaver command.