TMHMM is for prediction of transmembrane helices in proteins.


  • TMHMM User Guide
  • Erik L.L. Sonnhammer, Gunnar von Heijne, and Anders Krogh: 
    A hidden Markov model for predicting transmembrane helices in protein sequences.
    In Proc. of Sixth Int. Conf. on Intelligent Systems for Molecular Biology, p 175-182 
    Ed J. Glasgow, T. Littlejohn, F. Major, R. Lathrop, D. Sankoff, and C. Sensen 
    Menlo Park, CA: AAAI Press, 1998


Usage on Bridges


To see what versions of TMHMM are available type

module avail tmhmm

To see what other modules are needed, what commands are available and how to get additional help type

module help  tmhmm

To use TMHMM, include a command like this in your batch script or interactive session to load the TMHMM module:

module load tmhmm

Be sure you also load any other modules needed, as listed by the module help tmhmm command.