TMHMM
TMHMM is for prediction of transmembrane helices in proteins.
Documentation
- TMHMM User Guide
- Erik L.L. Sonnhammer, Gunnar von Heijne, and Anders Krogh:
A hidden Markov model for predicting transmembrane helices in protein sequences.
In Proc. of Sixth Int. Conf. on Intelligent Systems for Molecular Biology, p 175-182
Ed J. Glasgow, T. Littlejohn, F. Major, R. Lathrop, D. Sankoff, and C. Sensen
Menlo Park, CA: AAAI Press, 1998
Usage on Bridges
To see what versions of TMHMM are available type
module avail tmhmm
To see what other modules are needed, what commands are available and how to get additional help type
module help tmhmm
To use TMHMM, include a command like this in your batch script or interactive session to load the TMHMM module:
module load tmhmm
Be sure you also load any other modules needed, as listed by the module help tmhmm command.
