StringTie

StringTie is a fast, efficient assembler of RNA-Seq alignments into potential transcripts.

Documentation

• StringTie web home
• StringTie github page

Usage

To see what versions of StringTie are available type

module avail stringtie

To see what other modules are needed, what commands are available and how to get additional help type

module help stringtie

To use StringTie, include a command like this in your batch script or interactive session to load the stringtie module:

module load stringtie

Be sure you also load any other modules needed, as listed by the module help stringtie command.