Strelka
Strelka is an analysis package designed to detect somatic SNVs and small indels from the aligned sequencing reads of matched tumor-normal samples.
Documentation
- Strelka web site
- Strelka: Accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Christopher T. Saunders; Wendy Wong; Sajani Swamy; Jennifer Becq; Lisa J. Murray; R. Keira CheethamBioinformatics 2012; doi: 10.1093/bioinformatics/bts271
Usage on Bridges
To see what versions of Strelka are available type
module avail strelka
To see what other modules are needed, what commands are available and how to get additional help type
module help strelka
To use Strelka, include a command like this in your batch script or interactive session to load the Strelka module:
module load strelka
Be sure you also load any other modules needed, as listed by the module help strelka command.
