SignalP
SignalP 4.1 server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks.
Documentation
- Manual page for SignalP
- SignalP 4.0: discriminating signal peptides from transmembrane regions. Thomas Nordahl Petersen, Søren Brunak, Gunnar von Heijne, & Henrik Nielsen. Nature Methods 8, 785–786 (2011) doi:10.1038/nmeth.1701. Published online 29 September 2011.
Usage on Bridges
To see what versions of SignalP are available type
module avail signalp
To see what other modules are needed, what commands are available and how to get additional help type
module help signalp
To use SignalP, include a command like this in your batch script or interactive session to load the SignalP module:
module load signalp
Be sure you also load any other modules needed, as listed by the module help signalp command.
