Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. It seamlessly parses both FASTA and FASTQ files which can also be optionally compressed by gzip.




Usage on Bridges


To see what other modules are needed, what commands are available and how to get additional help type

module help seqtk

To see what versions of Seqtk are available type

module avail seqtk

To use Seqtk, include a command like this in your batch script or interactive session to load the Seqtk module:

module load seqtk

Be sure you also load any other modules needed, as listed by the module help seqtk command.