Ray
Ray is a parallel software that computes de novo genome assemblies with next-generation sequencing data. Ray is written in C++ and can run in parallel using the message-passing interface (MPI) standard.
Documentation
- Ray web site
- Ray Meta: scalable de novo metagenome assembly and profiling. Sébastien Boisvert, Frédéric Raymond, Élénie Godzaridis, François Laviolette and Jacques Corbeil. Genome Biology (BioMed Central Ltd). 13:R122, Published: 22 December 2012 doi:10.1186/gb-2012-13-12-r122
Usage on Bridges
To see what versions of Ray are available type
module avail ray
To see what other modules are needed, what commands are available and how to get additional help type
module help ray
To use Ray, include a command like this in your batch script or interactive session to load the Ray module:
module load ray
Be sure you also load any other modules needed, as listed by the module help ray command.
