PLATANUS
PLATANUS (PLATform for Assembling NUcleotide Sequences) is a de novo sequence assembler for NGS data.
Documentation
- PLATANUS home
- Citation: Kajitani R, Toshimoto K, Noguchi H, Toyoda A, Ogura Y, Okuno M, Yabana M, Harada M, Nagayasu E, Maruyama H, Kohara Y, Fujiyama A, Hayashi T, Itoh T, “Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads”. Genome Res. 2014 Aug;24(8):1384-95. doi: 10.1101/gr.170720.113
Usage
To see what versions of PLATANUS are available type
module avail platanus
To see what other modules are needed, what commands are available and how to get additional help type
module help platanus
To use PLATANUS, include a command like this in your batch script or interactive session to load the PLATANUS module:
module load platanus
Be sure you also load any other modules needed, as listed by the module help platanus command.
