Phylogenetic Analysis by Maximum Likelihood (PAML)
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood
Documentation
http://abacus.gene.ucl.ac.uk/software/paml.html
Usage
To see what versions of PAML are available type
module avail paml
To see what other modules are needed, what commands are available and how to get additional help type
module help paml
To use PAML, include a command like this in your batch script or interactive session to load the PAML module:
module load paml
Be sure you also load any other modules needed, as listed by the module help paml
command.