MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form.




To see what versions of MUMmer are available type

module avail mummer

To see what other modules are needed, what commands are available and how to get additional help type

module help mummer

To use MUMmer, include a command like this in your batch script or interactive session to load the mummer module:

module load mummer

Be sure you also load any other modules needed, as listed by the module help mummer command.