MAKER is a genome annotation pipeline.


  • MAKER web site
  • Cantarel, B. L., Korf, I., Robb, S. M. C., Parra, G., Ross, E., Moore, B., … Yandell, M. (2008). MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes. Genome Research18(1), 188–196.



To see what versions of MAKER are available type

module avail maker

To see what other modules are needed, what commands are available and how to get additional help type

module help maker

To use MAKER, include a command like this in your batch script or interactive session to load the MAKER module:

module load maker

Be sure you also load any other modules needed, as listed by the module help maker command.