MACSE (Multiple Alignment of Coding SEquences) aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multiple frameshifts and/or stop codons.



To see what versions of MACSE are available type

module avail macse

To see what other modules are needed, what commands are available and how to get additional help type

module help macse

To use MACSE, include a command like this in your batch script or interactive session to load the MACSE module:

module load macse

Be sure you also load any other modules needed, as listed by the module help macse command.