Kallisto
Kallisto is a program for quantifying abundances of transcripts from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads.
Documentation
- Kallisto home
- Nicolas L Bray, Harold Pimentel, Páll Melsted and Lior Pachter Near-optimal probabilistic RNA-seq quantification, Nature Biotechnology 34, 525–527 (2016), doi:10.1038/nbt.3519
Usage
To see what versions of kallisto are available type
module avail kallisto
To see what other modules are needed, what commands are available and how to get additional help type
module help kallisto
To use kallisto, include a command like this in your batch script or interactive session to load the kallisto module:
module load kallisto
Be sure you also load any other modules needed, as listed by the module help kallisto command.
