HUMAnN2 is the second generation of HUMAnN (HMP Unified Metabolic Analysis Network). It is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomatic sequencing data, produced by the Huttenhower lab at Harvard.




To see what versions of HUMAnN2 are available type

module avail humann2

To see what other modules are needed, what commands are available and how to get additional help type

module help humann2

To use HUMAnN2, include a command like this in your batch script or interactive session to load the humann2 module:

module load humann2

Be sure you also load any other modules needed, as listed by the module help humann2 command.