Falcon is a set of tools for fast aligning long reads for consensus and assembly.

The Falcon tool kit is a set of simple code collection which can be used for studying efficient assembly algorithm for haploid and diploid genomes. 

Sample scripts for Falcon use are available in directory /opt/packages/examples/falcon on Bridges.



Usage on Bridges


To see what other modules are needed, what commands are available and how to get additional help type

module help falcon


To see what versions of Falcon are available type

module avail falcon


To use Falcon, include a command like this in your batch script or interactive session to load the Falcon module:

module load falcon

Be sure you also load any other modules needed, as listed by the module help falcon command.