Exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, either exhaustive dynamic programming or a variety of heuristics.


  • http://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate



To see what versions of Exonerate are available type

module avail exonerate

To see what other modules are needed, what commands are available and how to get additional help type

module help exonerate

To use Exonerate, include a command like this in your batch script or interactive session to load the Exonerate module:

module load exonerate

Be sure to also load any other modules needed, as listed by the module help exonerate command.